Prospects of molecular markers in Fusarium species diversity

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Prospects of molecular markers in Fusarium species diversity. / Nayaka, S. Chandra; Wulff, Ednar Gadelha; Udayashankar, A.C.; Nandini, B.P.; Niranjana, S.R.; Mortensen, C A Nieves Paulino; Prakash, H.S.

I: Applied Microbiology and Biotechnology, Bind 90, Nr. 5, 2011, s. 1625-1639.

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

Harvard

Nayaka, SC, Wulff, EG, Udayashankar, AC, Nandini, BP, Niranjana, SR, Mortensen, CANP & Prakash, HS 2011, 'Prospects of molecular markers in Fusarium species diversity', Applied Microbiology and Biotechnology, bind 90, nr. 5, s. 1625-1639. https://doi.org/10.1007/s00253-011-3209-3

APA

Nayaka, S. C., Wulff, E. G., Udayashankar, A. C., Nandini, B. P., Niranjana, S. R., Mortensen, C. A. N. P., & Prakash, H. S. (2011). Prospects of molecular markers in Fusarium species diversity. Applied Microbiology and Biotechnology, 90(5), 1625-1639. https://doi.org/10.1007/s00253-011-3209-3

Vancouver

Nayaka SC, Wulff EG, Udayashankar AC, Nandini BP, Niranjana SR, Mortensen CANP o.a. Prospects of molecular markers in Fusarium species diversity. Applied Microbiology and Biotechnology. 2011;90(5):1625-1639. https://doi.org/10.1007/s00253-011-3209-3

Author

Nayaka, S. Chandra ; Wulff, Ednar Gadelha ; Udayashankar, A.C. ; Nandini, B.P. ; Niranjana, S.R. ; Mortensen, C A Nieves Paulino ; Prakash, H.S. / Prospects of molecular markers in Fusarium species diversity. I: Applied Microbiology and Biotechnology. 2011 ; Bind 90, Nr. 5. s. 1625-1639.

Bibtex

@article{d32197f068f349b7ad503ba1a441484a,
title = "Prospects of molecular markers in Fusarium species diversity",
abstract = "Recent developments in genomics have opened up for newer opportunities to study the diversity and classification of fungi. The genus Fusarium contains many plant pathogens that attack diverse agricultural crops. Fusarium spp. are not only pathogenic to plants but are also known as toxin producers that negatively affect animal and human health. The identification of Fusarium species still remains one of the most critical issues in fungal taxonomy, given that the number of species recognized in the genus has been constantly changing in the last century due to the different taxonomic systems. This review focuses of various molecular-based techniques employed to study the diversity of Fusarium species causing diseases in major food crops. An introduction of fusarial diseases and their mycotoxins and molecular-marker-based methods for detection introduce the concept of marker application. Various well-known molecular techniques such as random amplified polymorphic DNA, amplification fragment length polymorphism, etc. to more modern ones such as DNA microarrays, DNA barcoding, and pyrosequencing and their application form the core of the review. Target regions in the genome which can be potential candidates for generation of probes and their use in phylogeny of Fusarium spp. are also presented. The concluding part emphasizes the value of molecular markers for assessing genetic variability and reveals that molecular tools are indispensable for providing information not only of one Fusarium species but on whole fungal community. This will be of extreme value for diagnosticians and researchers concerned with fungal biology, ecology, and genetics.",
keywords = "BRIC, Fusarium, Mycotoxins, Diversity, Molecular markers, Genetic variability",
author = "Nayaka, {S. Chandra} and Wulff, {Ednar Gadelha} and A.C. Udayashankar and B.P. Nandini and S.R. Niranjana and Mortensen, {C A Nieves Paulino} and H.S. Prakash",
year = "2011",
doi = "10.1007/s00253-011-3209-3",
language = "English",
volume = "90",
pages = "1625--1639",
journal = "Applied Microbiology and Biotechnology",
issn = "0175-7598",
publisher = "Springer",
number = "5",

}

RIS

TY - JOUR

T1 - Prospects of molecular markers in Fusarium species diversity

AU - Nayaka, S. Chandra

AU - Wulff, Ednar Gadelha

AU - Udayashankar, A.C.

AU - Nandini, B.P.

AU - Niranjana, S.R.

AU - Mortensen, C A Nieves Paulino

AU - Prakash, H.S.

PY - 2011

Y1 - 2011

N2 - Recent developments in genomics have opened up for newer opportunities to study the diversity and classification of fungi. The genus Fusarium contains many plant pathogens that attack diverse agricultural crops. Fusarium spp. are not only pathogenic to plants but are also known as toxin producers that negatively affect animal and human health. The identification of Fusarium species still remains one of the most critical issues in fungal taxonomy, given that the number of species recognized in the genus has been constantly changing in the last century due to the different taxonomic systems. This review focuses of various molecular-based techniques employed to study the diversity of Fusarium species causing diseases in major food crops. An introduction of fusarial diseases and their mycotoxins and molecular-marker-based methods for detection introduce the concept of marker application. Various well-known molecular techniques such as random amplified polymorphic DNA, amplification fragment length polymorphism, etc. to more modern ones such as DNA microarrays, DNA barcoding, and pyrosequencing and their application form the core of the review. Target regions in the genome which can be potential candidates for generation of probes and their use in phylogeny of Fusarium spp. are also presented. The concluding part emphasizes the value of molecular markers for assessing genetic variability and reveals that molecular tools are indispensable for providing information not only of one Fusarium species but on whole fungal community. This will be of extreme value for diagnosticians and researchers concerned with fungal biology, ecology, and genetics.

AB - Recent developments in genomics have opened up for newer opportunities to study the diversity and classification of fungi. The genus Fusarium contains many plant pathogens that attack diverse agricultural crops. Fusarium spp. are not only pathogenic to plants but are also known as toxin producers that negatively affect animal and human health. The identification of Fusarium species still remains one of the most critical issues in fungal taxonomy, given that the number of species recognized in the genus has been constantly changing in the last century due to the different taxonomic systems. This review focuses of various molecular-based techniques employed to study the diversity of Fusarium species causing diseases in major food crops. An introduction of fusarial diseases and their mycotoxins and molecular-marker-based methods for detection introduce the concept of marker application. Various well-known molecular techniques such as random amplified polymorphic DNA, amplification fragment length polymorphism, etc. to more modern ones such as DNA microarrays, DNA barcoding, and pyrosequencing and their application form the core of the review. Target regions in the genome which can be potential candidates for generation of probes and their use in phylogeny of Fusarium spp. are also presented. The concluding part emphasizes the value of molecular markers for assessing genetic variability and reveals that molecular tools are indispensable for providing information not only of one Fusarium species but on whole fungal community. This will be of extreme value for diagnosticians and researchers concerned with fungal biology, ecology, and genetics.

KW - BRIC

KW - Fusarium

KW - Mycotoxins

KW - Diversity

KW - Molecular markers

KW - Genetic variability

U2 - 10.1007/s00253-011-3209-3

DO - 10.1007/s00253-011-3209-3

M3 - Journal article

C2 - 21494869

VL - 90

SP - 1625

EP - 1639

JO - Applied Microbiology and Biotechnology

JF - Applied Microbiology and Biotechnology

SN - 0175-7598

IS - 5

ER -

ID: 33490215